5VIF: Electrophilic probes for deciphering substrate recognition by O-GlcNAc transferase

PDB ID: 5VIFDownload
MMDB ID: 155159
PDB Deposition Date: 2017/4/15
Updated in MMDB: 2018/12
Experimental Method:
x-ray diffraction
Resolution: 2.25  Å
Source Organism:
Similar Structures:
Biological Unit for 5VIF: tetrameric; determined by author and by software (PISA)
Molecular Components in 5VIF
Label Count Molecule
Proteins (4 molecules)
2
Udp-n-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 KDA Subunit
(Gene symbol: OGT)
Molecule annotation
2
Ckii
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
2
URIDINE-5'-DIPHOSPHATEURIDINE-5'-DIPHOSPHATE
2
2
2-{[(2E)-4-chlorobut-2-enoyl]amino}-2-deoxy-beta-D-glucopyranose2-{[(2E)-4-chlorobut-2-enoyl]amino}-2-deoxy-beta-D-glucopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303