5VI6: Crystal structure of histone deacetylase 8 in complex with trapoxin A

PDB ID: 5VI6Download
MMDB ID: 154282
PDB Deposition Date: 2017/4/14
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 1.237  Å
Source Organism:
Helicoma ambiens▼
Similar Structures:
Biological Unit for 5VI6: dimeric; determined by author and by software (PISA)
Molecular Components in 5VI6
Label Count Molecule
Proteins (2 molecules)
1
Histone Deacetylase 8
Molecule annotation
1
Trapoxin a
Molecule annotation
Chemicals and Non-standard biopolymers (15 molecules)
1
1
ZINC IONZINC ION
2
2
POTASSIUM IONPOTASSIUM ION
3
10
1,2-ETHANEDIOL1,2-ETHANEDIOL
4
2
1,4-DIETHYLENE DIOXIDE1,4-DIETHYLENE DIOXIDE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303