5VGJ: Crystal Structure of the Human Fab VRC38.01, an HIV-1 V1V2-Directed Neutralizing Antibody Isolated from Donor N90, bound to a scaffolded WITO V1V2 domain

PDB ID: 5VGJDownload
MMDB ID: 151406
PDB Deposition Date: 2017/4/11
Updated in MMDB: 2024/12
Experimental Method:
x-ray diffraction
Resolution: 3.456  Å
Source Organism:
Human immunodeficiency virus 1▼
Similar Structures:
Biological Unit for 5VGJ: trimeric; determined by author and by software (PISA)
Molecular Components in 5VGJ
Label Count Molecule
Proteins (3 molecules)
1
1fd6-v1v2-wito
Molecule annotation
1
Vrc38.01 FAB Heavy Chain
Molecule annotation
1
Vrc38.01 FAB Light Chain
Molecule annotation
Chemicals and Non-standard biopolymers (20 molecules)
1
7
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
3
beta-D-mannopyranosebeta-D-mannopyranose
3
10
alpha-D-mannopyranosealpha-D-mannopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303