5V1F: DNA polymerase beta substrate complex with 8-oxoG at the primer terminus and incoming dCTP

PDB ID: 5V1FDownload
MMDB ID: 150723
PDB Deposition Date: 2017/3/2
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 2.181  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 5V1F: tetrameric; determined by author and by software (PISA)
Molecular Components in 5V1F
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Beta
Molecule annotation
Nucleotides(3 molecules)
1
DNA (5'-d(*cp*cp*gp*ap*cp*gp*cp*cp*gp*cp*ap*tp*cp*ap*gp*c)-3')
Molecule annotation
1
DNA (5'-d(*gp*cp*tp*gp*ap*tp*gp*cp*gp*(8og))-3')
Molecule annotation
1
DNA (5'-d(p*gp*tp*cp*gp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
2
CALCIUM IONCALCIUM ION
2
1
2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303