5TZD: Structure of the WT S. venezulae BldD-(CTD-c-di-GMP)2 assembly intermediate

PDB ID: 5TZDDownload
MMDB ID: 149968
PDB Deposition Date: 2016/11/21
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 1.749  Å
Source Organism:
Similar Structures:
Biological Unit for 5TZD: monomeric; determined by author and by software (PISA)
Molecular Components in 5TZD
Label Count Molecule
Protein (1 molecule)
1
DNA-binding Protein
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
3
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303