5TW5: Structure of mouse CD1d with bound glycosphingolipid JJ112

PDB ID: 5TW5Download
MMDB ID: 154649
PDB Deposition Date: 2016/11/11
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 1.85  Å
Source Organism:
Similar Structures:
Biological Unit for 5TW5: dimeric; determined by author and by software (PISA)
Molecular Components in 5TW5
Label Count Molecule
Proteins (2 molecules)
1
Antigen-presenting Glycoprotein Cd1d1
(Gene symbol: Cd1d1)
Molecule annotation
1
Beta-2-microglobulin
(Gene symbol: B2m)
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
4
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
PALMITIC ACIDPALMITIC ACID
3
1
N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxy-16-phenylhexadecan-2-yl]octanamideN-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxy-16-phenylhexadecan-2-yl]octanamide
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303