5TRD: Structure of RbkR (Riboflavin Kinase) from Thermoplasma acidophilum determined in complex with CTP and its cognate DNA operator

PDB ID: 5TRDDownload
MMDB ID: 145187
PDB Deposition Date: 2016/10/26
Updated in MMDB: 2016/11
Experimental Method:
x-ray diffraction
Resolution: 1.85  Å
Source Organism:
Thermoplasma acidophilum DSM 1728▼
Similar Structures:
Biological Unit for 5TRD: tetrameric; determined by author and by software (PISA)
Molecular Components in 5TRD
Label Count Molecule
Proteins (2 molecules)
2
Riboflavin Kinase
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*ap*tp*tp*ap*cp*tp*ap*ap*tp*tp*cp*ap*cp*gp*ap*gp*tp*ap*a)-3')
Molecule annotation
1
DNA (5'-d(p*tp*tp*tp*ap*cp*tp*cp*gp*tp*gp*ap*ap*tp*tp*ap*gp*tp*ap*a)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
2
CYTIDINE-5'-TRIPHOSPHATECYTIDINE-5'-TRIPHOSPHATE
2
2
SODIUM IONSODIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303