5TBB: Postcatalytic ternary complex of Human DNA Polymerase Beta with Gapped DNA substrate, incorporated (-)FTC and PPi

PDB ID: 5TBBDownload
MMDB ID: 146341
PDB Deposition Date: 2016/9/11
Updated in MMDB: 2019/12
Experimental Method:
x-ray diffraction
Resolution: 2.39  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 5TBB: tetrameric; determined by author and by software (PISA)
Molecular Components in 5TBB
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Beta
Molecule annotation
Nucleotides(3 molecules)
1
5-mer Phosphorylated Downstream Primer
Molecule annotation
1
10- MER Primer
Molecule annotation
1
16- MER Template
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
1
1
MANGANESE (II) IONMANGANESE (II) ION
2
4
SODIUM IONSODIUM ION
3
2
ACETATE IONACETATE ION
4
1
PYROPHOSPHATEPYROPHOSPHATE
5
1
[(2R,5S)-5-(4-amino-5-fluoro-2-oxopyrimidin-1(2H)-yl)-1,3-oxathiolan-2-yl]methyl dihydrogen phosphate[(2R,5S)-5-(4-amino-5-fluoro-2-oxopyrimidin-1(2H)-yl)-1,3-oxathiolan-2-yl]methyl dihydrogen phosphate
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303