5TB9: Precatalytic ternary complex of Human DNA Polymerase Beta in closed conformation With Gapped DNA substrate incoming (-)FTC-TP and Mn2+

PDB ID: 5TB9Download
MMDB ID: 146339
PDB Deposition Date: 2016/9/11
Updated in MMDB: 2019/12
Experimental Method:
x-ray diffraction
Resolution: 2.49  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 5TB9: tetrameric; determined by author and by software (PISA)
Molecular Components in 5TB9
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Beta
Molecule annotation
Nucleotides(3 molecules)
1
5-mer Phosphorylated Downstream Primer
Molecule annotation
1
10- MER Primer
Molecule annotation
1
16- MER Template
Molecule annotation
Chemicals and Non-standard biopolymers (14 molecules)
1
1
[[(2R,5S)-5-(4-azanyl-5-fluoranyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate[[(2R,5S)-5-(4-azanyl-5-fluoranyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
2
6
MANGANESE (II) IONMANGANESE (II) ION
3
4
SODIUM IONSODIUM ION
4
3
ACETATE IONACETATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303