5TB8: Precatalytic ternary complex of Human DNA Polymerase Beta in closed conformation With Gapped DNA substrate incoming (-)3TC-TP and Mn2+

PDB ID: 5TB8Download
MMDB ID: 146338
PDB Deposition Date: 2016/9/11
Updated in MMDB: 2019/12
Experimental Method:
x-ray diffraction
Resolution: 2  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 5TB8: tetrameric; determined by author and by software (PISA)
Molecular Components in 5TB8
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Beta
Molecule annotation
Nucleotides(3 molecules)
1
5-mer Phosphorylated Downstream Prime
Molecule annotation
1
10- MER Primer
Molecule annotation
1
16- MER Template
Molecule annotation
Chemicals and Non-standard biopolymers (20 molecules)
1
1
Lamivudine TriphosphateLamivudine Triphosphate
2
6
MANGANESE (II) IONMANGANESE (II) ION
3
5
SODIUM IONSODIUM ION
4
2
CHLORIDE IONCHLORIDE ION
5
6
ACETATE IONACETATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303