5PI0: PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 13)

PDB ID: 5PI0Download
MMDB ID: 148162
PDB Deposition Date: 2017/2/7
Updated in MMDB: 2017/10
Experimental Method:
x-ray diffraction
Resolution: 1.5  Å
Source Organism:
Similar Structures:
Biological Unit for 5PI0: monomeric; determined by author
Molecular Components in 5PI0
Label Count Molecule
Protein (1 molecule)
1
Lysine-specific Demethylase 4D
(Gene symbol: KDM4D)
Molecule annotation
Chemicals and Non-standard biopolymers (15 molecules)
1
1
ZINC ION (Link to PubChem not yet available)ZINC ION
2
1
NICKEL (II) ION (Link to PubChem not yet available)NICKEL (II) ION
3
1
MAGNESIUM ION (Link to PubChem not yet available)MAGNESIUM ION
4
1
N-OXALYLGLYCINE (Link to PubChem not yet available)N-OXALYLGLYCINE
5
8
1,2-ETHANEDIOL (Link to PubChem not yet available)1,2-ETHANEDIOL
6
3
SULFATE ION (Link to PubChem not yet available)SULFATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303