5PHL: PanDDA analysis group deposition -- Crystal Structure of JMJD2D in complex with N09506a

PDB ID: 5PHLDownload
MMDB ID: 243872
PDB Deposition Date: 2017/2/7
Updated in MMDB: 2024/03
Experimental Method:
x-ray diffraction
Resolution: 1.141  Å
Source Organism:
Similar Structures:
Biological Unit for 5PHL: monomeric; determined by author
Molecular Components in 5PHL
Label Count Molecule
Protein (1 molecule)
1
Lysine-specific Demethylase 4D
(Gene symbol: KDM4D)
Molecule annotation
Chemicals and Non-standard biopolymers (17 molecules)
1
1
ZINC IONZINC ION
2
1
NICKEL (II) IONNICKEL (II) ION
3
1
N-OXALYLGLYCINEN-OXALYLGLYCINE
4
9
1,2-ETHANEDIOL1,2-ETHANEDIOL
5
4
SULFATE IONSULFATE ION
6
1
5-chloro-1H-indole-2,3-dione5-chloro-1H-indole-2,3-dione
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303