5ODC: Heterodisulfide Reductase / [nife]-hydrogenase Complex From Methanothermococcus Thermolithotrophicus At 2.3 A Resolution

PDB ID: 5ODCDownload
MMDB ID: 154075
PDB Deposition Date: 2017/7/5
Updated in MMDB: 2017/09
Experimental Method:
x-ray diffraction
Resolution: 2.3  Å
Source Organism:
Similar Structures:
Biological Unit for 5ODC: dodecameric; determined by author and by software (PISA)
Molecular Components in 5ODC
Label Count Molecule
Proteins (12 molecules)
2
Heterodisulfide Reductase, Subunit a
Molecule annotation
2
Heterodisulfide Reductase, Subunit B
Molecule annotation
2
Heterodisulfide Reductase, Subunit C
Molecule annotation
2
Methyl-viologen Reducing Hydrogenase Subunit D
Molecule annotation
2
Methyl-viologen Reducing Hydrogenase Subunit G
Molecule annotation
2
Methyl-viologen Reducing Hydrogenase Subunit a
Molecule annotation
Chemicals and Non-standard biopolymers (60 molecules)
1
2
Flavin-Adenine DinucleotideFlavin-Adenine Dinucleotide
2
2
Sodium IonSodium Ion
3
5
Acetate IonAcetate Ion
4
1
3,6,9,12,15,18,21,24,27,30,33,36,39-Tridecaoxahentetracontane-1,41-Diol3,6,9,12,15,18,21,24,27,30,33,36,39-Tridecaoxahentetracontane-1,41-Diol
5
22
IronSULFUR CLUSTERIronSULFUR CLUSTER
6
15
GlycerolGlycerol
7
4
Non-Cubane [4fe-4s]-ClusterNon-Cubane [4fe-4s]-Cluster
8
2
Fe2S2 (INORGANIC) CLUSTERFe2S2 (INORGANIC) CLUSTER
9
1
2-Amino-2-Hydroxymethyl-Propane-1,3-Diol2-Amino-2-Hydroxymethyl-Propane-1,3-Diol
10
2
Calcium IonCalcium Ion
11
2
Magnesium IonMagnesium Ion
12
2
Formyl[bis(Hydrocyanato-1kappac)]ironnickel(Fe-Ni)Formyl[bis(Hydrocyanato-1kappac)]ironnickel(Fe-Ni)
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303