5NPF: Crystal structure of txGH116 (beta-glucosidase from Thermoanaerobacterium xylolyticum) in complex with beta Cyclophellitol Cyclosulfate probe ME594

PDB ID: 5NPFDownload
MMDB ID: 153426
PDB Deposition Date: 2017/4/16
Updated in MMDB: 2017/09
Experimental Method:
x-ray diffraction
Resolution: 1.38  Å
Source Organism:
Similar Structures:
Biological Unit for 5NPF: monomeric; determined by author and by software (PISA)
Molecular Components in 5NPF
Label Count Molecule
Protein (1 molecule)
1
Glucosylceramidase
Molecule annotation
Chemicals and Non-standard biopolymers (15 molecules)
1
13
1,2-ETHANEDIOL1,2-ETHANEDIOL
2
1
CALCIUM IONCALCIUM ION
3
1
[(1~{R},2~{R},3~{R},4~{S},5~{R})-2-(hydroxymethyl)-3,4,5,6-tetrakis(oxidanyl)cyclohexyl] hydrogen sulfate[(1~{R},2~{R},3~{R},4~{S},5~{R})-2-(hydroxymethyl)-3,4,5,6-tetrakis(oxidanyl)cyclohexyl] hydrogen sulfate
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303