5NPD: Crystal Structure of D412N nucleophile mutant cjAgd31B (alpha-transglucosylase from Glycoside Hydrolase Family 31) in complex with alpha Cyclophellitol Aziridine probe CF021

PDB ID: 5NPDDownload
MMDB ID: 153424
PDB Deposition Date: 2017/4/16
Updated in MMDB: 2017/09
Experimental Method:
x-ray diffraction
Resolution: 1.95  Å
Source Organism:
Similar Structures:
Biological Unit for 5NPD: monomeric; determined by author and by software (PISA)
Molecular Components in 5NPD
Label Count Molecule
Protein (1 molecule)
1
Oligosaccharide 4-alpha-d-glucosyltransferase
Molecule annotation
Chemicals and Non-standard biopolymers (16 molecules)
1
7
SULFATE IONSULFATE ION
2
1
TETRAETHYLENE GLYCOLTETRAETHYLENE GLYCOL
3
6
1,2-ETHANEDIOL1,2-ETHANEDIOL
4
1
(1~{S},2~{S},3~{S},4~{R},5~{R},6~{S})-5-(hydroxymethyl)-7-azabicyclo[4.1.0]heptane-2,3,4-triol(1~{S},2~{S},3~{S},4~{R},5~{R},6~{S})-5-(hydroxymethyl)-7-azabicyclo[4.1.0]heptane-2,3,4-triol
5
1
OXALATE IONOXALATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303