5NPC: Crystal Structure of D412N nucleophile mutant cjAgd31B (alpha-transglucosylase from Glycoside Hydrolase Family 31) in complex with unreacted alpha Cyclophellitol Cyclosulfate probe ME647

PDB ID: 5NPCDownload
MMDB ID: 153423
PDB Deposition Date: 2017/4/16
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 1.96  Å
Source Organism:
Similar Structures:
Biological Unit for 5NPC: monomeric; determined by author and by software (PISA)
Molecular Components in 5NPC
Label Count Molecule
Protein (1 molecule)
1
Oligosaccharide 4-alpha-d-glucosyltransferase
Molecule annotation
Chemicals and Non-standard biopolymers (23 molecules)
1
8
SULFATE IONSULFATE ION
2
12
1,2-ETHANEDIOL1,2-ETHANEDIOL
3
1
TETRAETHYLENE GLYCOLTETRAETHYLENE GLYCOL
4
1
(3~{a}~{R},4~{R},5~{S},6~{R},7~{R},7~{a}~{S})-7-(hydroxymethyl)-2,2-bis(oxidanylidene)-3~{a},4,5,6,7,7~{a}-hexahydrobenzo[d][1,3,2]dioxathiole-4,5,6-triol(3~{a}~{R},4~{R},5~{S},6~{R},7~{R},7~{a}~{S})-7-(hydroxymethyl)-2,2-bis(oxidanylidene)-3~{a},4,5,6,7,7~{a}-hexahydrobenzo[d][1,3,2]dioxathiole-4,5,6-triol
5
1
OXALATE IONOXALATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303