5NO3: RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate without uS3)

PDB ID: 5NO3Download
MMDB ID: 151324
PDB Deposition Date: 2017/4/10
Updated in MMDB: 2017/09
Experimental Method:
electron microscopy
Resolution: 5.16  Å
Source Organism:
Similar Structures:
Biological Unit for 5NO3: eicosameric; determined by author and by software (PISA)
Molecular Components in 5NO3
Label Count Molecule
Proteins (19 molecules)
1
30S Ribosomal Protein S2
Molecule annotation
1
30S Ribosomal Protein S4
Molecule annotation
1
30S Ribosomal Protein S5
Molecule annotation
1
30S Ribosomal Protein S6
(Gene symbol: rpsF)
Molecule annotation
1
30S Ribosomal Protein S7
(Gene symbol: rpsG)
Molecule annotation
1
30S Ribosomal Protein S8
Molecule annotation
1
30S Ribosomal Protein S9
(Gene symbol: rpsI)
Molecule annotation
1
30S Ribosomal Protein S10
Molecule annotation
1
30S Ribosomal Protein S11
Molecule annotation
1
30S Ribosomal Protein S12
Molecule annotation
1
30S Ribosomal Protein S13
Molecule annotation
1
30S Ribosomal Protein S14
Molecule annotation
1
30S Ribosomal Protein S15
Molecule annotation
1
30S Ribosomal Protein S16
Molecule annotation
1
30S Ribosomal Protein S17
Molecule annotation
1
30S Ribosomal Protein S18
(Gene symbol: rpsR)
Molecule annotation
1
30S Ribosomal Protein S19
Molecule annotation
1
30S Ribosomal Protein S20
Molecule annotation
1
Small Ribosomal Subunit Biogenesis Gtpase Rsga
(Gene symbol: rsgA)
Molecule annotation
Nucleotide(1 molecule)
1
16S Ribosomal RNA
Molecule annotation
Chemicals and Non-standard biopolymers (74 molecules)
1
71
MAGNESIUM IONMAGNESIUM ION
2
2
ZINC IONZINC ION
3
1
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTERPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303