5NES: Discovery, crystal structures and atomic force microscopy study of thioether ligated D,L-cyclic antimicrobial peptides against multidrug resistant Pseudomonas aeruginosa

PDB ID: 5NESDownload
MMDB ID: 154388
PDB Deposition Date: 2017/3/11
Updated in MMDB: 2024/12
Experimental Method:
x-ray diffraction
Resolution: 1.606  Å
Source Organism:
Similar Structures:
Biological Unit for 5NES: pentameric; determined by author and by software (PISA)
Molecular Components in 5NES
Label Count Molecule
Proteins (4 molecules)
4
Fucose-binding Lectin II (Pa-iil)
Molecule annotation
Chemicals and Non-standard biopolymers (14 molecules)
E
1
CYD-TRP-TRD-LYS-LYD-LYS-LYD-LYS-TRD-TRP-CYD
1
8
CALCIUM IONCALCIUM ION
2
4
3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid
3
1
1,3-dimethylbenzene1,3-dimethylbenzene
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303