5NDC: Structure of ba3-type cytochrome c oxidase from Thermus thermophilus by serial femtosecond crystallography

PDB ID: 5NDCDownload
MMDB ID: 153856
PDB Deposition Date: 2017/3/8
Updated in MMDB: 2018/11
Experimental Method:
x-ray diffraction
Resolution: 2.3  Å
Source Organism:
Similar Structures:
Biological Unit for 5NDC: trimeric; determined by author and by software (PISA)
Molecular Components in 5NDC
Label Count Molecule
Proteins (3 molecules)
1
Cytochrome C Oxidase Subunit 1
(Gene symbol: TTHA1135)
Molecule annotation
1
Cytochrome C Oxidase Subunit 2
(Gene symbol: TTHA1134)
Molecule annotation
1
Cytochrome C Oxidase Polypeptide IIA
Molecule annotation
Chemicals and Non-standard biopolymers (19 molecules)
1
1
COPPER (II) IONCOPPER (II) ION
2
1
PROTOPORPHYRIN IX CONTAINING FEPROTOPORPHYRIN IX CONTAINING FE
3
1
HEME-ASHEME-AS
4
15
(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
5
1
DINUCLEAR COPPER IONDINUCLEAR COPPER ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303