5MMI: Structure of the large subunit of the chloroplast ribosome

PDB ID: 5MMIDownload
MMDB ID: 146313
PDB Deposition Date: 2016/12/10
Updated in MMDB: 2019/12
Experimental Method:
electron microscopy
Resolution: 3.2  Å
Source Organism:
Similar Structures:
Biological Unit for 5MMI: 35-meric; determined by author and by software (PISA)
Molecular Components in 5MMI
Label Count Molecule
Proteins (31 molecules)
1
50S Ribosomal Protein L31
Molecule annotation
1
50S Ribosomal Protein L32, Chloroplastic
(Gene symbol: rpl32)
Molecule annotation
1
50S Ribosomal Protein L33, Chloroplastic
(Gene symbol: rpl33)
Molecule annotation
1
50S Ribosomal Protein L34, Chloroplastic
Molecule annotation
1
50S Ribosomal Protein L35, Chloroplastic
Molecule annotation
1
50S Ribosomal Protein L36, Chloroplastic
(Gene symbol: rpl36)
Molecule annotation
1
Plastid Ribosomal Protein Cl37, Psrp5
Molecule annotation
1
50S Ribosomal Protein 6, Chloroplastic
Molecule annotation
1
50S Ribosomal Protein L2, Chloroplastic
(Gene symbol: rpl2)
Molecule annotation
1
Plastid Ribosomal Protein Ul3c
Molecule annotation
1
Plastid Ribosomal Protein Ul4c
Molecule annotation
1
Plastid Ribosomal Protein Ul5c
Molecule annotation
1
Plastid Ribosomal Protein Ul6c
Molecule annotation
1
Plastid Ribosomal Protein Bl9c
Molecule annotation
1
Plastid Ribosomal Protein Ul10c
Molecule annotation
1
50S Ribosomal Protein L11, Chloroplastic
Molecule annotation
1
50S Ribosomal Protein L13, Chloroplastic
Molecule annotation
1
50S Ribosomal Protein L14, Chloroplastic
(Gene symbol: rpl14)
Molecule annotation
1
Plastid Ribosomal Protein Ul15c
Molecule annotation
1
50S Ribosomal Protein L16, Chloroplastic
(Gene symbol: rpl16)
Molecule annotation
1
Plastid Ribosomal Protein Bl17c
Molecule annotation
1
Plastid Ribosomal Protein Ul18c
Molecule annotation
1
50S Ribosomal Protein L19, Chloroplastic
Molecule annotation
1
50S Ribosomal Protein L20, Chloroplastic
(Gene symbol: rpl20)
Molecule annotation
1
50S Ribosomal Protein L21, Chloroplastic
Molecule annotation
1
50S Ribosomal Protein L22, Chloroplastic
(Gene symbol: rpl22)
Molecule annotation
1
50S Ribosomal Protein L23, Chloroplastic
Molecule annotation
1
Plastid Ribosomal Protein Ul24c
Molecule annotation
1
Plastid Ribosomal Protein Bl27c
Molecule annotation
1
Plastid Ribosomal Protein Bl28c
Molecule annotation
1
Plastid Ribosomal Protein Ul29c
Molecule annotation
Nucleotides(4 molecules)
1
23S Ribosomal RNA
Molecule annotation
1
5S Ribosomal RNA
Molecule annotation
1
4.5s Ribosomal RNA
Molecule annotation
1
E-site tRNA
Molecule annotation
Chemicals and Non-standard biopolymers (503 molecules)
1
2
ZINC IONZINC ION
2
501
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303