5ML3: The crystal structure of PDE6D in complex to Deltasonamide1

PDB ID: 5ML3Download
MMDB ID: 147009
PDB Deposition Date: 2016/12/6
Updated in MMDB: 2017/02
Experimental Method:
x-ray diffraction
Resolution: 1.4  Å
Source Organism:
Similar Structures:
Biological Unit for 5ML3: monomeric; determined by author and by software (PISA)
Molecular Components in 5ML3
Label Count Molecule
Protein (1 molecule)
1
Retinal ROD Rhodopsin-sensitive Cgmp 3',5'-cyclic Phosphodiesterase Subunit Delta
(Gene symbol: PDE6D)
Molecule annotation
Chemical and Non-standard biopolymers (1 molecule)
1
1
~{N}1-[(4-chlorophenyl)methyl]-~{N}1-cyclopentyl-~{N}4-[[2-(methylamino)pyrimidin-4-yl]methyl]-~{N}4-(piperidin-4-ylmethyl)benzene-1,4-disulfonamide~{N}1-[(4-chlorophenyl)methyl]-~{N}1-cyclopentyl-~{N}4-[[2-(methylamino)pyrimidin-4-yl]methyl]-~{N}4-(piperidin-4-ylmethyl)benzene-1,4-disulfonamide
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303