5MKF: cryoEM Structure of Polycystin-2 in complex with calcium and lipids

PDB ID: 5MKFDownload
MMDB ID: 146598
PDB Deposition Date: 2016/12/4
Updated in MMDB: 2019/12
Experimental Method:
electron microscopy
Resolution: 4.2  Å
Source Organism:
Similar Structures:
Biological Unit for 5MKF: tetrameric; determined by author and by software (PISA)
Molecular Components in 5MKF
Label Count Molecule
Proteins (4 molecules)
4
Polycystin-2
(Gene symbol: PKD2)
Molecule annotation
Chemicals and Non-standard biopolymers (49 molecules)
1
20
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
4
1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE
3
12
PALMITIC ACIDPALMITIC ACID
4
8
4-AMINO-5-CYCLOHEXYL-3-HYDROXY-PENTANOIC ACID4-AMINO-5-CYCLOHEXYL-3-HYDROXY-PENTANOIC ACID
5
5
CALCIUM IONCALCIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303