5M1D: Crystal structure of N-terminally tagged UbiD from E. coli reconstituted with prFMN cofactor

PDB ID: 5M1DDownload
MMDB ID: 146273
PDB Deposition Date: 2016/10/7
Updated in MMDB: 2017/04
Experimental Method:
x-ray diffraction
Resolution: 2.7  Å
Source Organism:
Similar Structures:
Biological Unit for 5M1D: hexameric; determined by author and by software (PISA)
Molecular Components in 5M1D
Label Count Molecule
Proteins (6 molecules)
6
3-octaprenyl-4-hydroxybenzoate Carboxy-lyase
Molecule annotation
Chemicals and Non-standard biopolymers (20 molecules)
1
6
MANGANESE (II) IONMANGANESE (II) ION
2
6
1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-y l)-D-ribitol1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-y l)-D-ribitol
3
6
SODIUM IONSODIUM ION
4
2
SULFATE IONSULFATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303