5LJ3: Structure of the core of the yeast spliceosome immediately after branching

PDB ID: 5LJ3Download
MMDB ID: 141626
PDB Deposition Date: 2016/7/17
Updated in MMDB: 2018/10
Experimental Method:
electron microscopy
Resolution: 3.8  Å
Source Organism:
Similar Structures:
Biological Unit for 5LJ3: 38-meric; determined by author
Molecular Components in 5LJ3
Label Count Molecule
Proteins (33 molecules)
1
Pre-mrna-splicing Factor 8(Gene symbol: PRP8)
Molecule annotation
1
Protein Cwc16(Gene symbol: YJU2)
Molecule annotation
1
Pre-mrna-splicing Factor Cwc25(Gene symbol: CWC25)
Molecule annotation
1
Pre-mrna-splicing Factor Snu114(Gene symbol: SNU114)
Molecule annotation
1
Isy1
Molecule annotation
1
Cwc22
Molecule annotation
1
Prp46
Molecule annotation
1
Pre-mrna-processing Protein 45(Gene symbol: PRP45)
Molecule annotation
1
Pre-mrna-splicing Factor Bud31(Gene symbol: BUD31)
Molecule annotation
1
Cwc2
Molecule annotation
1
Pre-mrna-splicing Factor Slt11(Gene symbol: ECM2)
Molecule annotation
1
Cef1
Molecule annotation
1
Cwc15
Molecule annotation
1
Pre-mrna-splicing Factor Cwc21(Gene symbol: CWC21)
Molecule annotation
1
Clf1
Molecule annotation
1
Syf1
Molecule annotation
2
Small Nuclear Ribonucleoprotein-associated Protein B(Gene symbol: SMB1)
Molecule annotation
2
Small Nuclear Ribonucleoprotein SM D3(Gene symbol: SMD3)
Molecule annotation
2
Small Nuclear Ribonucleoprotein E(Gene symbol: SME1)
Molecule annotation
2
Small Nuclear Ribonucleoprotein F(Gene symbol: SMX3)
Molecule annotation
2
Small Nuclear Ribonucleoprotein G(Gene symbol: SMX2)
Molecule annotation
2
Small Nuclear Ribonucleoprotein SM D1(Gene symbol: SMD1)
Molecule annotation
2
Small Nuclear Ribonucleoprotein SM D2(Gene symbol: SMD2)
Molecule annotation
1
U2 Small Nuclear Ribonucleoprotein A'(Gene symbol: LEA1)
Molecule annotation
1
U2 Small Nuclear Ribonucleoprotein B''(Gene symbol: MSL1)
Molecule annotation
1
Unknown
Molecule annotation
Nucleotides(5 molecules)
1
U5 Snrna (Small Nuclear Rna)
Molecule annotation
1
Exon 1 (5' Exon) of Ubc4 Pre-mrna
Molecule annotation
1
Intron of Ubc4 Pre-mrna
Molecule annotation
1
U2 Snrna (Small Nuclear Rna)
Molecule annotation
1
U6 Snrna (Small Nuclear Rna)
Molecule annotation
Chemicals (10 molecules)
1
2
2
7
3
1
* Click molecule labels to explore molecular sequence information.

Citing MMDB
.