5KZC: Crystal structure of an HIV-1 gp120 engineered outer domain with a Man9 glycan at position N276, in complex with broadly neutralizing antibody VRC01

PDB ID: 5KZCDownload
MMDB ID: 142206
PDB Deposition Date: 2016/7/24
Updated in MMDB: 2019/12
Experimental Method:
x-ray diffraction
Resolution: 3.25  Å
Source Organism:
Similar Structures:
Biological Unit for 5KZC: trimeric; determined by author
Molecular Components in 5KZC
Label Count Molecule
Proteins (3 molecules)
1
Vrc01 FAB Heavy Chain
Molecule annotation
1
Engineered Outer Domain of Gp120
Molecule annotation
1
Vrc01 FAB Light Chain
Molecule annotation
Chemicals and Non-standard biopolymers (12 molecules)
1
6
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
beta-D-mannopyranosebeta-D-mannopyranose
3
5
alpha-D-mannopyranosealpha-D-mannopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303