5KHD: Structure of 1.75 A BldD C-domain-c-di-GMP complex

PDB ID: 5KHDDownload
MMDB ID: 140604
PDB Deposition Date: 2016/6/14
Updated in MMDB: 2017/12
Experimental Method:
x-ray diffraction
Resolution: 1.7501  Å
Source Organism:
Similar Structures:
Biological Unit for 5KHD: dimeric; determined by author and by software (PISA)
Molecular Components in 5KHD
Label Count Molecule
Proteins (2 molecules)
2
DNA-binding Protein
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
4
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303