5KFG: Human DNA polymerase eta-DNA ternary complex: reaction with 10 mM Mn2+ for 30s

PDB ID: 5KFGDownload
MMDB ID: 140598
PDB Deposition Date: 2016/6/12
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 1.55  Å
Source Organism:
Similar Structures:
Biological Unit for 5KFG: trimeric; determined by author and by software (PISA)
Molecular Components in 5KFG
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase ETA
(Gene symbol: POLH)
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*cp*ap*tp*tp*ap*tp*gp*ap*cp*gp*cp*t)-3')
Molecule annotation
1
DNA (5'-d(*ap*gp*cp*gp*tp*cp*ap*t)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
2
MANGANESE (II) IONMANGANESE (II) ION
2
1
CALCIUM IONCALCIUM ION
3
2
GLYCEROLGLYCEROL
4
1
2'-DEOXYADENOSINE 5'-TRIPHOSPHATE2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
5
1
1,2-ETHANEDIOL1,2-ETHANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303