5K8C: X-ray structure of KdnB, 3-deoxy-alpha-D-manno-octulosonate 8-oxidase, from Shewanella oneidensis

PDB ID: 5K8CDownload
MMDB ID: 140168
PDB Deposition Date: 2016/5/28
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 1.85  Å
Source Organism:
Similar Structures:
Biological Unit for 5K8C: dimeric; determined by author and by software (PISA)
Molecular Components in 5K8C
Label Count Molecule
Proteins (2 molecules)
2
3-deoxy-alpha-d-manno-octulosonate 8-oxidase
(Gene symbol: SO_2477)
Molecule annotation
Chemicals and Non-standard biopolymers (14 molecules)
1
2
NICOTINAMIDE-ADENINE-DINUCLEOTIDENICOTINAMIDE-ADENINE-DINUCLEOTIDE
2
4
PHOSPHATE IONPHOSPHATE ION
3
4
CHLORIDE IONCHLORIDE ION
4
2
1,2-ETHANEDIOL1,2-ETHANEDIOL
5
2
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303