5K69: Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase 2 with carbapenem drug T224

PDB ID: 5K69Download
MMDB ID: 144748
PDB Deposition Date: 2016/5/24
Updated in MMDB: 2019/12
Experimental Method:
x-ray diffraction
Resolution: 2.001  Å
Source Organism:
Similar Structures:
Biological Unit for 5K69: monomeric; determined by author
Molecular Components in 5K69
Label Count Molecule
Protein (1 molecule)
1
L,d-transpeptidase 2
(Gene symbol: ldtB)
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
2
GLYCEROLGLYCEROL
2
1
(2~{S},3~{R},4~{R})-4-(1~{H}-indol-3-ylsulfanyl)-3-methyl-2-[(2~{S},3~{S})-3-oxidanyl-1-oxidanylidene-butan-2-yl]-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid(2~{S},3~{R},4~{R})-4-(1~{H}-indol-3-ylsulfanyl)-3-methyl-2-[(2~{S},3~{S})-3-oxidanyl-1-oxidanylidene-butan-2-yl]-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303