5JZY: Thrombin in complex with (S)-1-((R)-2-amino-3-cyclohexylpropanoyl)-N-(4-carbamimidoylbenzyl)pyrrolidine-2-carboxamide

PDB ID: 5JZYDownload
MMDB ID: 151476
PDB Deposition Date: 2016/5/17
Updated in MMDB: 2019/12
Experimental Method:
x-ray diffraction
Resolution: 1.27  Å
Source Organism:
Homo sapiens▼
Similar Structures:
Biological Unit for 5JZY: trimeric; determined by author and by software (PISA)
Molecular Components in 5JZY
Label Count Molecule
Proteins (3 molecules)
1
Prothrombin
Molecule annotation
1
Prothrombin
Molecule annotation
1
Hirudin Variant-2
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
1
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
3
DIMETHYL SULFOXIDEDIMETHYL SULFOXIDE
3
1
PHOSPHATE IONPHOSPHATE ION
4
2
SODIUM IONSODIUM ION
5
1
3-cyclohexyl-D-alanyl-N-[(4-carbamimidoylphenyl)methyl]-L-prolinamide3-cyclohexyl-D-alanyl-N-[(4-carbamimidoylphenyl)methyl]-L-prolinamide
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303