5JT1: The 3D structure of Ni-reconstituted U489C variant of [NiFeSe] hydrogenase from Desulfovibrio vulgaris Hildenborough in the oxidized state at 1.35 Angstrom resolution

PDB ID: 5JT1Download
MMDB ID: 241200
PDB Deposition Date: 2016/5/9
Updated in MMDB: 2024/04
Experimental Method:
x-ray diffraction
Resolution: 1.35  Å
Source Organism:
Similar Structures:
Biological Unit for 5JT1: dimeric; determined by software (PISA)
Molecular Components in 5JT1
Label Count Molecule
Proteins (2 molecules)
1
Periplasmic [nifese] Hydrogenase, Small Subunit
(Gene symbol: hysB)
Molecule annotation
1
Periplasmic [nifese] Hydrogenase, Large Subunit, Selenocysteine-containing
(Gene symbol: hysA)
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
3
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
2
1
oxygen-damaged SF4oxygen-damaged SF4
3
1
CARBONMONOXIDE-(DICYANO) IRONCARBONMONOXIDE-(DICYANO) IRON
4
1
NICKEL (II) IONNICKEL (II) ION
5
1
FE (II) IONFE (II) ION
6
1
HYDROSULFURIC ACIDHYDROSULFURIC ACID
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303