5JSY: The 3D structure of the Ni-reconstituted U489C variant of [NiFeSe] hydrogenase from Desulfovibrio vulgaris Hildenborough at 1.04 Angstrom resolution

PDB ID: 5JSYDownload
MMDB ID: 241199
PDB Deposition Date: 2016/5/9
Updated in MMDB: 2025/12
Experimental Method:
x-ray diffraction
Resolution: 1.04  Å
Source Organism:
Similar Structures:
Biological Unit for 5JSY: dimeric; determined by author and by software (PISA)
Molecular Components in 5JSY
Label Count Molecule
Proteins (2 molecules)
1
Periplasmic [nifese] Hydrogenase, Small Subunit
(Gene symbol: hysB)
Molecule annotation
1
Periplasmic [nifese] Hydrogenase, Large Subunit, Selenocysteine-containing
(Gene symbol: hysA)
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
3
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
2
1
CARBONMONOXIDE-(DICYANO) IRONCARBONMONOXIDE-(DICYANO) IRON
3
1
NICKEL (II) IONNICKEL (II) ION
4
1
FE (II) IONFE (II) ION
5
1
HYDROSULFURIC ACIDHYDROSULFURIC ACID
6
1
CHLORIDE IONCHLORIDE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303