5JS9: Uncleaved prefusion optimized gp140 trimer with an engineered 8-residue HR1 turn bound to broadly neutralizing antibodies 8ANC195 and PGT128

PDB ID: 5JS9Download
MMDB ID: 141169
PDB Deposition Date: 2016/5/7
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 6.918  Å
Source Organism:
Human immunodeficiency virus 1▼
Similar Structures:
Biological Unit for 5JS9: octadecameric; determined by author
Molecular Components in 5JS9
Label Count Molecule
Proteins (18 molecules)
3
Broadly Neutralizing Antibody Pgt128 Heavy Chain
Molecule annotation
3
Broadly Neutralizing Antibody Pgt128 Light Chain
Molecule annotation
3
Gp120
Molecule annotation
3
Gp41
Molecule annotation
3
Broadly Neutralizing Antibody 8anc195 Heavy Chain
Molecule annotation
3
Broadly Neutralizing Antibody 8anc195 Light Chain
Molecule annotation
Chemicals and Non-standard biopolymers (156 molecules)
1
77
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
19
beta-D-mannopyranosebeta-D-mannopyranose
3
60
alpha-D-mannopyranosealpha-D-mannopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303