5JEA: Structure of a cytoplasmic 11-subunit RNA exosome complex including Ski7, bound to RNA

PDB ID: 5JEADownload
MMDB ID: 140893
PDB Deposition Date: 2016/4/18
Updated in MMDB: 2018/11
Experimental Method:
x-ray diffraction
Resolution: 2.65  Å
Source Organism:
Saccharomyces cerevisiae S288C▼
Similar Structures:
Biological Unit for 5JEA: dodecameric; determined by author and by software (PISA)
Molecular Components in 5JEA
Label Count Molecule
Proteins (11 molecules)
1
Exosome Complex Component Rrp45
Molecule annotation
1
Exosome Complex Component Ski6
Molecule annotation
1
Exosome Complex Component Rrp43
Molecule annotation
1
Exosome Complex Component Rrp46
Molecule annotation
1
Exosome Complex Component Rrp42
Molecule annotation
1
Exosome Complex Component Mtr3
Molecule annotation
1
Exosome Complex Component Rrp40
Molecule annotation
1
Exosome Complex Component Rrp4
Molecule annotation
1
Exosome Complex Component Csl4
Molecule annotation
1
Exosome Complex Exonuclease Dis3
Molecule annotation
1
Superkiller Protein 7,endolysin
Molecule annotation
Nucleotide(1 molecule)
1
RNA (29-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (12 molecules)
1
7
(4S)-2-METHYL-2,4-PENTANEDIOL(4S)-2-METHYL-2,4-PENTANEDIOL
2
4
SODIUM IONSODIUM ION
3
1
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303