5JDM: Structural mechanisms of extracellular ion exchange and induced binding-site occlusion in the sodium-calcium exchanger NCX_Mj soaked with 2.5 mM Na+ and 0.1mM Sr2+

PDB ID: 5JDMDownload
MMDB ID: 139211
PDB Deposition Date: 2016/4/17
Updated in MMDB: 2019/11
Experimental Method:
x-ray diffraction
Resolution: 2.558  Å
Source Organism:
Similar Structures:
Biological Unit for 5JDM: monomeric; determined by author and by software (PISA)
Molecular Components in 5JDM
Label Count Molecule
Protein (1 molecule)
1
Sodium-calcium Exchanger Ncx_mj
Molecule annotation
Chemicals and Non-standard biopolymers (17 molecules)
1
2
SODIUM IONSODIUM ION
2
1
STRONTIUM IONSTRONTIUM ION
3
2
(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
4
9
PENTADECANEPENTADECANE
5
2
PENTAETHYLENE GLYCOLPENTAETHYLENE GLYCOL
6
1
3,6,9,12,15-PENTAOXAHEPTADECANE3,6,9,12,15-PENTAOXAHEPTADECANE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303