5J2D: Ternary complex crystal structure of DNA polymerase Beta with C:C mismatch at the primer terminus

PDB ID: 5J2DDownload
MMDB ID: 144364
PDB Deposition Date: 2016/3/29
Updated in MMDB: 2016/11
Experimental Method:
x-ray diffraction
Resolution: 2.1  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 5J2D: tetrameric; determined by author and by software (PISA)
Molecular Components in 5J2D
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Beta
Molecule annotation
Nucleotides(3 molecules)
1
Template Strand
Molecule annotation
1
Primer Strand
Molecule annotation
1
Downstream Primer Strand
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
1
1
2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE
2
2
MAGNESIUM IONMAGNESIUM ION
3
2
SODIUM IONSODIUM ION
4
4
CHLORIDE IONCHLORIDE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303