5INK: Mouse Tdp2 reaction product (5'-phosphorylated DNA)-abasic/THF-Mg2+ complex

PDB ID: 5INKDownload
MMDB ID: 138624
PDB Deposition Date: 2016/3/7
Updated in MMDB: 2019/12
Experimental Method:
x-ray diffraction
Resolution: 2.15  Å
Source Organism:
Mus musculus▼
Similar Structures:
Biological Unit for 5INK: tetrameric; determined by author and by software (PISA)
Molecular Components in 5INK
Label Count Molecule
Proteins (2 molecules)
2
Tyrosyl-dna Phosphodiesterase 2
Molecule annotation
Nucleotides(2 molecules)
2
DNA (5'-d(p*(3dr)p*cp*gp*ap*ap*tp*tp*cp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
1
GLYCEROLGLYCEROL
2
2
MAGNESIUM IONMAGNESIUM ION
3
1
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4
1
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303