5IIM: Crystal structure of the pre-catalytic ternary extension complex of DNA polymerase lambda with an 8-oxo-dG:dA base-pair

PDB ID: 5IIMDownload
MMDB ID: 142827
PDB Deposition Date: 2016/3/1
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 1.941  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 5IIM: tetrameric; determined by author and by software (PISA)
Molecular Components in 5IIM
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Lambda
Molecule annotation
Nucleotides(3 molecules)
1
DNA (5'-d(p*gp*cp*cp*g)-3')
Molecule annotation
1
DNA (5'-d(*cp*ap*gp*tp*ap*a)-3')
Molecule annotation
1
DNA (5'-d(*cp*gp*gp*cp*ap*(8og)p*tp*ap*cp*tp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
1
2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE
2
2
SODIUM IONSODIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303