5HRK: The crystal structure of AsfvPolX(H115F mutant): 1nt-gap(P) DNA2:dGTP ternary complex

PDB ID: 5HRKDownload
MMDB ID: 146521
PDB Deposition Date: 2016/1/23
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2.9  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 5HRK: tetrameric; determined by author and by software (PISA)
Molecular Components in 5HRK
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Beta-like Protein
Molecule annotation
Nucleotides(3 molecules)
1
DNA (5'-d(*gp*tp*gp*ap*gp*tp*ap*cp*a)-3')
Molecule annotation
1
DNA (5'-d(*cp*gp*tp*tp*cp*tp*ap*tp*gp*tp*gp*tp*ap*cp*tp*cp*ap*c)-3')
Molecule annotation
1
DNA (5'-d(p*ap*tp*ap*gp*ap*ap*cp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
1
2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
2
2
MANGANESE (II) IONMANGANESE (II) ION
3
2
SULFATE IONSULFATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303