5HCH: X-ray structure of a lectin-bound DNA duplex containing an unnatural phenanthrenyl pair

PDB ID: 5HCHDownload
MMDB ID: 137067
PDB Deposition Date: 2016/1/4
Updated in MMDB: 2025/12
Experimental Method:
x-ray diffraction
Resolution: 2.9  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 5HCH: dodecameric; determined by author and by software (PISA)
Molecular Components in 5HCH
Label Count Molecule
Proteins (4 molecules)
4
Fucose-binding Lectin
Molecule annotation
Nucleotides(8 molecules)
4
DNA (5'-d(*cp*gp*cp*ap*tp*tp*(df)p*tp*ap*tp*cp*gp*c)-3')
Molecule annotation
4
DNA (5'-d(p*gp*cp*gp*ap*tp*ap*(df)p*ap*ap*tp*gp*cp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (12 molecules)
1
8
CALCIUM IONCALCIUM ION
2
4
(6S)-2,6-anhydro-1-deoxy-6-(2-{[(S)-hydroxy(oxido)-lambda~5~-phosphanyl]oxy}ethyl)-D-galactitol(6S)-2,6-anhydro-1-deoxy-6-(2-{[(S)-hydroxy(oxido)-lambda~5~-phosphanyl]oxy}ethyl)-D-galactitol
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303