5H56: ADP and dTDP bound Crystal structure of thymidylate kinase (aq_969) from Aquifex Aeolicus VF5

PDB ID: 5H56Download
MMDB ID: 152075
PDB Deposition Date: 2016/11/4
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 1.7  Å
Source Organism:
Similar Structures:
Biological Unit for 5H56: dimeric; determined by author and by software (PISA)
Molecular Components in 5H56
Label Count Molecule
Proteins (2 molecules)
2
Thymidylate Kinase
(Gene symbol: tmk)
Molecule annotation
Chemicals and Non-standard biopolymers (14 molecules)
1
2
ADENOSINE-5'-DIPHOSPHATEADENOSINE-5'-DIPHOSPHATE
2
2
THYMIDINE-5'-DIPHOSPHATETHYMIDINE-5'-DIPHOSPHATE
3
6
MAGNESIUM IONMAGNESIUM ION
4
2
CALCIUM IONCALCIUM ION
5
2
(4S)-2-METHYL-2,4-PENTANEDIOL(4S)-2-METHYL-2,4-PENTANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303