5GZ4: Crystal structure of snake venom phosphodiesterase (PDE) from Taiwan cobra (Naja atra atra)

PDB ID: 5GZ4Download
MMDB ID: 154731
PDB Deposition Date: 2016/9/26
Updated in MMDB: 2024/12
Experimental Method:
x-ray diffraction
Resolution: 2.55  Å
Source Organism:
Similar Structures:
Biological Unit for 5GZ4: monomeric; determined by author and by software (PISA)
Molecular Components in 5GZ4
Label Count Molecule
Protein (1 molecule)
1
Snake Venom Phosphodiesterase (Pde)
Molecule annotation
Chemicals and Non-standard biopolymers (16 molecules)
1
8
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
alpha-L-fucopyranosealpha-L-fucopyranose
3
1
beta-D-mannopyranosebeta-D-mannopyranose
4
2
alpha-D-mannopyranosealpha-D-mannopyranose
5
2
ZINC IONZINC ION
6
1
CALCIUM IONCALCIUM ION
7
1
1,2-ETHANEDIOL1,2-ETHANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303