5GQ9: Crystal structure of Thermus thermophilus Argonaute in complex with g1C siDNA and DNA target

PDB ID: 5GQ9Download
MMDB ID: 153325
PDB Deposition Date: 2016/8/6
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2.7  Å
Source Organism:
Thermus thermophilus HB27▼
Similar Structures:
Biological Unit for 5GQ9: hexameric; determined by author and by software (PISA)
Molecular Components in 5GQ9
Label Count Molecule
Proteins (2 molecules)
2
Thermus Thermophilus Argonaute
Molecule annotation
Nucleotides(4 molecules)
2
DNA (5'-d(p*cp*gp*ap*gp*gp*tp*ap*gp*tp*ap*gp*gp*tp*tp*gp*t)-3')
Molecule annotation
2
DNA (5'-d(p*ap*cp*ap*ap*cp*cp*tp*ap*cp*tp*ap*cp*cp*tp*cp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
6
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303