5GKI: Structure of EndoMS-dsDNA3 complex

PDB ID: 5GKIDownload
MMDB ID: 144510
PDB Deposition Date: 2016/7/4
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2.9  Å
Source Organism:
Thermococcus kodakarensis KOD1▼
Similar Structures:
Biological Unit for 5GKI: tetrameric; determined by author and by software (PISA)
Molecular Components in 5GKI
Label Count Molecule
Proteins (2 molecules)
2
Endonuclease Endoms
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*gp*cp*cp*tp*ap*gp*gp*tp*cp*cp*cp*gp*tp*cp*c)-3')
Molecule annotation
1
DNA (5'-d(*gp*gp*ap*cp*gp*gp*gp*gp*cp*cp*tp*ap*gp*gp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
2
MAGNESIUM IONMAGNESIUM ION
2
4
(4S)-2-METHYL-2,4-PENTANEDIOL(4S)-2-METHYL-2,4-PENTANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303