5GKF: Structure of EndoMS-dsDNA1' complex

PDB ID: 5GKFDownload
MMDB ID: 144507
PDB Deposition Date: 2016/7/4
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2.8  Å
Source Organism:
Thermococcus kodakarensis KOD1▼
Similar Structures:
Biological Unit for 5GKF: tetrameric; determined by author and by software (PISA)
Molecular Components in 5GKF
Label Count Molecule
Proteins (2 molecules)
2
Endonuclease Endoms
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*cp*gp*cp*tp*ap*cp*ap*tp*gp*tp*cp*gp*tp*cp*c)-3')
Molecule annotation
1
DNA (5'-d(*gp*gp*ap*cp*gp*ap*cp*tp*tp*gp*tp*ap*gp*cp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
5
(4S)-2-METHYL-2,4-PENTANEDIOL(4S)-2-METHYL-2,4-PENTANEDIOL
2
2
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303