5FZK: Crystal structure of the catalytic domain of human JARID1B in complex with 3D fragment N,3-dimethyl-N-(pyridin-3-ylmethyl)-1,2-oxazole-5- carboxamide (N10051a) (ligand modelled based on PANDDA event map, SGC - Diamond I04-1 fragment screening)

PDB ID: 5FZKDownload
MMDB ID: 138164
PDB Deposition Date: 2016/3/14
Updated in MMDB: 2016/04
Experimental Method:
x-ray diffraction
Resolution: 2.05  Å
Source Organism:
Similar Structures:
Biological Unit for 5FZK: monomeric; determined by author and by software (PISA)
Molecular Components in 5FZK
Label Count Molecule
Protein (1 molecule)
1
Lysine-specific Demethylase 5B
(Gene symbol: KDM5B)
Molecule annotation
Chemicals and Non-standard biopolymers (16 molecules)
1
1
ZINC IONZINC ION
2
1
CHLORIDE IONCHLORIDE ION
3
1
MANGANESE (II) IONMANGANESE (II) ION
4
9
1,2-ETHANEDIOL1,2-ETHANEDIOL
5
1
N,3-dimethyl-N-[(pyridin-3-yl)methyl]-1,2-oxazole-5-carboxamideN,3-dimethyl-N-[(pyridin-3-yl)methyl]-1,2-oxazole-5-carboxamide
6
1
PHOSPHATE IONPHOSPHATE ION
7
2
DIMETHYL SULFOXIDEDIMETHYL SULFOXIDE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303