5FYV: Crystal structure of the catalytic domain of human JARID1B in complex with oxaloacetate

PDB ID: 5FYVDownload
MMDB ID: 148486
PDB Deposition Date: 2016/3/10
Updated in MMDB: 2017/03
Experimental Method:
x-ray diffraction
Resolution: 1.87  Å
Source Organism:
Similar Structures:
Biological Unit for 5FYV: monomeric; determined by author and by software (PISA)
Molecular Components in 5FYV
Label Count Molecule
Protein (1 molecule)
1
Lysine-specific Demethylase 5B
(Gene symbol: KDM5B)
Molecule annotation
Chemicals and Non-standard biopolymers (23 molecules)
1
1
ZINC IONZINC ION
2
1
MANGANESE (II) IONMANGANESE (II) ION
3
1
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4
17
1,2-ETHANEDIOL1,2-ETHANEDIOL
5
1
OXALOACETATE IONOXALOACETATE ION
6
1
CHLORIDE IONCHLORIDE ION
7
1
PHOSPHATE IONPHOSPHATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303