5FYT: Crystal structure of the catalytic domain of human JARID1B in complex with 3D fragment (5-fluoro-2-oxo-2,3-dihydro-1H-indol-3-yl)acetic acid (N09996a)

PDB ID: 5FYTDownload
MMDB ID: 137745
PDB Deposition Date: 2016/3/9
Updated in MMDB: 2016/03
Experimental Method:
x-ray diffraction
Resolution: 1.87  Å
Source Organism:
Similar Structures:
Biological Unit for 5FYT: monomeric; determined by author and by software (PISA)
Molecular Components in 5FYT
Label Count Molecule
Protein (1 molecule)
1
Lysine-specific Demethylase 5B
(Gene symbol: KDM5B)
Molecule annotation
Chemicals and Non-standard biopolymers (27 molecules)
1
2
ZINC IONZINC ION
2
1
MANGANESE (II) IONMANGANESE (II) ION
3
1
2-[(3S)-5-fluoranyl-2-oxidanylidene-1,3-dihydroindol-3-yl]ethanoic acid2-[(3S)-5-fluoranyl-2-oxidanylidene-1,3-dihydroindol-3-yl]ethanoic acid
4
18
1,2-ETHANEDIOL1,2-ETHANEDIOL
5
3
DIMETHYL SULFOXIDEDIMETHYL SULFOXIDE
6
1
PHOSPHATE IONPHOSPHATE ION
7
1
CHLORIDE IONCHLORIDE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303