5FYJ: Crystal Structure at 3.4 A Resolution of Fully Glycosylated HIV-1 Clade G X1193.c1 SOSIP.664 Prefusion Env Trimer in Complex with Broadly Neutralizing Antibodies PGT122, 35O22 and VRC01

PDB ID: 5FYJDownload
MMDB ID: 141454
PDB Deposition Date: 2016/3/8
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 3.11  Å
Source Organism:
Human immunodeficiency virus 1▼
Similar Structures:
Biological Unit for 5FYJ: 24-meric; determined by software (PISA)
Molecular Components in 5FYJ
Label Count Molecule
Proteins (24 molecules)
3
Gp41 ENV Ectodomain
Molecule annotation
3
35o22
Molecule annotation
3
35o22
Molecule annotation
3
Gp120 ENV Ectodomain
Molecule annotation
3
Pgt122
Molecule annotation
3
Pgt122
Molecule annotation
6
Vrc01
Molecule annotation
Chemicals and Non-standard biopolymers (227 molecules)
1
115
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
17
beta-D-mannopyranosebeta-D-mannopyranose
3
80
alpha-D-mannopyranosealpha-D-mannopyranose
4
9
CITRIC ACIDCITRIC ACID
5
6
1,2-ETHANEDIOL1,2-ETHANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303