5FYI: Crystal structure of human JMJD2A in complex with pyruvate

PDB ID: 5FYIDownload
MMDB ID: 137533
PDB Deposition Date: 2016/3/7
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2.096  Å
Source Organism:
Similar Structures:
Biological Unit for 5FYI: monomeric; determined by software (PISA)
Molecular Components in 5FYI
Label Count Molecule
Protein (1 molecule)
1
Lysine-specific Demethylase 4A
(Gene symbol: KDM4A)
Molecule annotation
Chemicals and Non-standard biopolymers (13 molecules)
1
1
NICKEL (II) IONNICKEL (II) ION
2
2
PYRUVIC ACIDPYRUVIC ACID
3
1
DIMETHYL SULFOXIDEDIMETHYL SULFOXIDE
4
8
1,2-ETHANEDIOL1,2-ETHANEDIOL
5
1
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303